PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2AL_E5B3B79F7.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB
Protein Properties Length: 306aa    MW: 33305.4 Da    PI: 6.0882
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2AL_E5B3B79F7.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.58.2e-151564148
                           TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48
                           +g+WT+eEd+ lv+ +++ Gg+  +W+  ++  g++R++k+c++rw +yl
  Traes_2AL_E5B3B79F7.1 15 KGPWTEEEDKALVEHIQKRGGNvgSWRGLPKAAGLNRCGKSCRLRWTNYL 64
                           79**********************************************97 PP

2Myb_DNA-binding50.93.7e-1670114147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            rg+++ eE+ l++ +++ lG++ W+tIa ++  gRt++++k++w+++
  Traes_2AL_E5B3B79F7.1  70 RGNFSDEEERLIITLHAGLGNK-WSTIATHLE-GRTDNEIKNYWNTH 114
                            89********************.*********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-21767IPR009057Homeodomain-like
PROSITE profilePS5129415.8191064IPR017930Myb domain
SuperFamilySSF466892.09E-2712111IPR009057Homeodomain-like
SMARTSM007174.4E-101466IPR001005SANT/Myb domain
PfamPF002496.1E-131564IPR001005SANT/Myb domain
CDDcd001675.23E-81764No hitNo description
PROSITE profilePS5129426.53865119IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.4E-2668119IPR009057Homeodomain-like
SMARTSM007177.9E-1569117IPR001005SANT/Myb domain
PfamPF002494.7E-1470114IPR001005SANT/Myb domain
CDDcd001674.20E-1172115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MGRSPCCCHD AGVKKGPWTE EEDKALVEHI QKRGGNVGSW RGLPKAAGLN RCGKSCRLRW  60
TNYLRPDIKR GNFSDEEERL IITLHAGLGN KWSTIATHLE GRTDNEIKNY WNTHIRKKLL  120
RMGVDPVTHQ QLPPDRTNHD VNGAAAALLW AAAAASLGGL DTGALMQAQL LQQLLQAIGS  180
NNSTTGLIAN LAAANTVLNS SSSFVPNQMN YLQTGYLCNN SNLSEQHVVQ QQLTNDTSPG  240
TSSFAAAEPA DQLCNTAASY DVAPAGDWSL TQEFGGLLEP MMELPGLCSL EGDSFWKDIL  300
EDSYRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-271511927128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2432711e-134AK243271.1 Oryza sativa Japonica Group cDNA, clone: J100049K04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003581590.21e-135PREDICTED: transcription factor MYB39
SwissprotQ8GWP08e-68MYB39_ARATH; Transcription factor MYB39
TrEMBLW5AY270.0W5AY27_WHEAT; Uncharacterized protein
STRINGBGIOSGA014443-PA1e-119(Oryza sativa Indica Group)
STRINGLOC_Os04g50680.11e-119(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.22e-70myb domain protein 9
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]